Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dmrta2DMRT-like family A2. (448 aa)    
Predicted Functional Partners:
ENSACLP00000017518
WD repeat domain 24.
    
 0.740
kptn
Kaptin (actin binding protein).
    
 0.739
SZT2
SZT2 subunit of KICSTOR complex.
    
 0.731
ENSACLP00000034458
Uncharacterized protein.
    
 0.708
wdr59
WD repeat domain 59.
    
 0.706
nprl2
NPR2 like, GATOR1 complex subunit.
    
 0.704
ENSACLP00000004590
Armadillo like helical domain containing 1.
      
 0.633
immp1l
Mitochondrial inner membrane protease subunit.
    
 0.624
itfg2
Integrin alpha FG-GAP repeat containing 2.
    
 0.624
nprl3
NPR3-like, GATOR1 complex subunit.
    
 0.590
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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