Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cgnl1Cingulin-like 1. (1283 aa)    
Predicted Functional Partners:
ENSACLP00000013773
Tight junction protein 1b; Belongs to the MAGUK family.
    
 0.913
LOC113021929
Tight junction protein 1a; Belongs to the MAGUK family.
    
 0.913
ARHGEF2
Rho/rac guanine nucleotide exchange factor (GEF) 2.
     
 0.900
LOC113014449
Uncharacterized protein.
     
 0.900
LOC113026614
Uncharacterized protein.
     
  0.872
uso1
USO1 vesicle transport factor.
   
 0.826
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.823
ENSACLP00000007689
Uncharacterized protein.
    
 0.820
trappc8
Trafficking protein particle complex 8.
    
 0.819
ENSACLP00000027191
Uncharacterized protein.
    
 0.812
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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