STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cgnl1Cingulin-like 1. (1283 aa)    
Predicted Functional Partners:
ENSACLP00000013773
Tight junction protein 1b; Belongs to the MAGUK family.
    
 0.900
LOC113021929
Tight junction protein 1a; Belongs to the MAGUK family.
    
 0.900
ARHGEF2
Rho/rac guanine nucleotide exchange factor (GEF) 2.
     
 0.894
LOC113014449
Uncharacterized protein.
     
 0.894
ENSACLP00000012032
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.881
trappc8
Trafficking protein particle complex 8.
    
 0.874
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.871
TRAPPC2B
Trafficking protein particle complex 2B.
    
 0.864
LOC113026614
Uncharacterized protein.
  
  
 
0.851
ENSACLP00000003055
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.830
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.