STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113029175Uncharacterized protein. (2994 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.983
rad21
RAD21 cohesin complex component a.
   
 0.950
ENSACLP00000016191
Structural maintenance of chromosomes protein.
   
 0.940
pds5b
PDS5 cohesin associated factor B.
   
 0.938
pds5a
PDS5 cohesin associated factor A.
   
 0.938
smc4
Structural maintenance of chromosomes protein.
   
 0.924
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.921
LOC113029849
REC8 meiotic recombination protein b.
   
 0.921
smc1a
Structural maintenance of chromosomes protein.
   
 0.919
LOC113026355
Structural maintenance of chromosomes protein.
   
 0.919
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.