STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000004380NACHT domain-containing protein. (568 aa)    
Predicted Functional Partners:
mavs
CARD_2 domain-containing protein.
    
 0.550
ENSACLP00000001733
BRCA1/BRCA2-containing complex, subunit 3.
    
  0.527
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
  0.525
nme9
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.519
ripk2
Receptor-interacting serine-threonine kinase 2.
   
 0.515
ENSACLP00000017156
WD repeat domain 90.
   
   0.496
ripk4
Receptor-interacting serine-threonine kinase 4.
    
  0.466
ENSACLP00000018609
NIMA-related kinase 7; Belongs to the protein kinase superfamily.
    
  0.463
ENSACLP00000023466
NIMA-related kinase 6.
    
  0.463
ENSACLP00000028873
Protein kinase domain-containing protein.
    
  0.463
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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