Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113006820Zinc finger protein 512. (896 aa)    
Predicted Functional Partners:
gtf3c4
General transcription factor IIIC, polypeptide 4.
    
 0.947
gtf3c3
General transcription factor IIIC, polypeptide 3.
    
 0.946
gtf3c5
General transcription factor IIIC, polypeptide 5.
   
 0.945
GTF3C1
General transcription factor IIIC subunit 1.
   
 0.927
polr2h
Info polymerase (RNA) II (DNA directed) polypeptide H.
    
 0.795
LOC113027513
Retinoblastoma binding protein 4, like.
    
 0.776
LOC113011815
Retinoblastoma binding protein 4.
    
 0.776
LOC113014472
WD_REPEATS_REGION domain-containing protein.
    
 0.776
gpatch4
G patch domain containing 4.
    
   0.766
rexo4
REX4 homolog, 3'-5' exonuclease.
    
 
 0.765
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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