LOC113012252 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113012252

Uncharacterized protein. (194 aa)

Predicted Functional Partners:

dctn4

0.994

dctn3

0.992

dctn5

0.992

dctn2

0.992

actr10

0.991

LOC113026320

0.985

LOC113018559

0.976

ENSACLP00000040036

0.976

capzb

0.962

fam193b

0.899

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000040036	LOC113012252	ENSACLP00000040036	ENSACLP00000004418	Dynactin 1b.	Uncharacterized protein.	0.976
ENSACLP00000040036	LOC113026320	ENSACLP00000040036	ENSACLP00000029422	Dynactin 1b.	Actin related protein 1, centractin.	0.988
ENSACLP00000040036	actr10	ENSACLP00000040036	ENSACLP00000039733	Dynactin 1b.	Actin related protein 10; Belongs to the actin family.	0.989
ENSACLP00000040036	capzb	ENSACLP00000040036	ENSACLP00000032578	Dynactin 1b.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.963
ENSACLP00000040036	dctn2	ENSACLP00000040036	ENSACLP00000027745	Dynactin 1b.	Dynactin 2 (p50).	0.993
ENSACLP00000040036	dctn3	ENSACLP00000040036	ENSACLP00000005993	Dynactin 1b.	Dynactin 3 (p22).	0.991
ENSACLP00000040036	dctn4	ENSACLP00000040036	ENSACLP00000003652	Dynactin 1b.	Dynactin 4.	0.988
ENSACLP00000040036	dctn5	ENSACLP00000040036	ENSACLP00000015104	Dynactin 1b.	Dynactin 5.	0.986
LOC113012252	ENSACLP00000040036	ENSACLP00000004418	ENSACLP00000040036	Uncharacterized protein.	Dynactin 1b.	0.976
LOC113012252	LOC113018559	ENSACLP00000004418	ENSACLP00000029281	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.976
LOC113012252	LOC113026320	ENSACLP00000004418	ENSACLP00000029422	Uncharacterized protein.	Actin related protein 1, centractin.	0.985
LOC113012252	actr10	ENSACLP00000004418	ENSACLP00000039733	Uncharacterized protein.	Actin related protein 10; Belongs to the actin family.	0.991
LOC113012252	capzb	ENSACLP00000004418	ENSACLP00000032578	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.962
LOC113012252	dctn2	ENSACLP00000004418	ENSACLP00000027745	Uncharacterized protein.	Dynactin 2 (p50).	0.992
LOC113012252	dctn3	ENSACLP00000004418	ENSACLP00000005993	Uncharacterized protein.	Dynactin 3 (p22).	0.992
LOC113012252	dctn4	ENSACLP00000004418	ENSACLP00000003652	Uncharacterized protein.	Dynactin 4.	0.994
LOC113012252	dctn5	ENSACLP00000004418	ENSACLP00000015104	Uncharacterized protein.	Dynactin 5.	0.992
LOC113012252	fam193b	ENSACLP00000004418	ENSACLP00000005678	Uncharacterized protein.	Family with sequence similarity 193 member B.	0.899
LOC113018559	LOC113012252	ENSACLP00000029281	ENSACLP00000004418	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.976
LOC113018559	LOC113026320	ENSACLP00000029281	ENSACLP00000029422	CAP-Gly domain-containing protein.	Actin related protein 1, centractin.	0.988