STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113028271Uncharacterized protein. (1084 aa)    
Predicted Functional Partners:
itga1
Integrin, alpha 1; Belongs to the integrin alpha chain family.
     
  0.872
LOC113010138
Integrin beta; Belongs to the integrin beta chain family.
     
  0.872
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
     
  0.872
ENSACLP00000013746
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
     
  0.872
itgb1
Integrin beta; Belongs to the integrin beta chain family.
     
  0.872
LOC113021803
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
  0.872
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
     
  0.872
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
     
  0.872
itga10
Integrin, alpha 10; Belongs to the integrin alpha chain family.
     
  0.872
itgb5
Integrin beta; Belongs to the integrin beta chain family.
     
  0.872
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.