STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113022595Calcium binding and coiled-coil domain 1b. (567 aa)    
Predicted Functional Partners:
LOC113030206
Malate synthase-like.
   
 
 0.863
ENSACLP00000015298
NBR1 autophagy cargo receptor b.
    
 0.800
LOC113028111
NBR1 autophagy cargo receptor a.
    
 0.800
ENSACLP00000000122
Aryl-hydrocarbon receptor nuclear translocator 2.
    
   0.756
LOC113031385
Aryl hydrocarbon receptor nuclear translocator.
    
   0.756
ENSACLP00000009777
WDFY family member 4.
    
  0.694
ENSACLP00000010328
Uncharacterized protein.
    
  0.694
ENSACLP00000010589
Tumor protein p53 binding protein, 1.
    
 0.667
crlf3
Cytokine receptor-like factor 3.
      
 0.658
phf5a
PHD finger protein 5A.
      
 0.635
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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