Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ENSACLP00000004463Ubiquitin specific peptidase 54a. (1187 aa)    
Predicted Functional Partners:
myoz1
Uncharacterized protein.
   
 
  0.690
RPS27A
Ribosomal protein S27a.
    
  0.689
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 
 0.654
ddx56
DEAD (Asp-Glu-Ala-Asp) box helicase 56.
    
 
 0.644
psmb1
Proteasome subunit beta.
    
   0.618
LOC113034868
Synaptopodin 2-like a.
   
 
  0.566
ENSACLP00000009605
Ubiquitin B.
    
   0.504
LOC113030103
Uncharacterized protein.
    
   0.504
ENSACLP00000002725
Titin-cap (telethonin).
   
 
 0.502
LOC113028256
Myozenin 1b.
   
 
  0.496
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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