STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113032799Ankyrin repeat domain 28b. (1052 aa)    
Predicted Functional Partners:
ENSACLP00000017535
Serine/threonine-protein phosphatase.
   
 0.753
PPP6C
Serine/threonine-protein phosphatase.
   
 0.753
LOC113008641
Protein phosphatase 6, regulatory subunit 2a.
    
 0.699
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.699
ppp6r2
Protein phosphatase 6, regulatory subunit 2b.
    
 0.699
ENSACLP00000020299
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.661
ift81
Intraflagellar transport 81 homolog.
    
 0.636
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.635
LOC113036715
F-box and WD repeat domain containing 11b.
    
 0.629
ENSACLP00000017756
V-rel avian reticuloendotheliosis viral oncogene homolog A.
   
 0.626
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.