STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smug1Single-strand-selective monofunctional uracil-DNA glycosylase 1. (289 aa)    
Predicted Functional Partners:
adat3
Adenosine deaminase tRNA specific 3.
   
 0.979
tyms
Thymidylate synthetase.
  
 
 0.923
ENSACLP00000008878
Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae).
   
 0.900
rbks
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
 0.893
tk1
Thymidine kinase.
    
 0.862
alg5
ALG5 dolichyl-phosphate beta-glucosyltransferase.
    
 0.839
LOC113022889
Activity-dependent neuroprotector homeobox a.
    
 0.839
pudp
Pseudouridine 5'-phosphatase.
    
  0.830
LOC113026526
Zgc:136858.
    
  0.827
dolk
Dolichol kinase.
     
 0.825
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.