STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113010082BTB (POZ) domain containing 2b. (563 aa)    
Predicted Functional Partners:
cops3
COP9 signalosome subunit 3.
    
 0.831
LOC113036190
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.820
CUL3
Cullin 3; Belongs to the cullin family.
   
 0.820
cops2
COP9 signalosome subunit 2.
   
  0.819
cops5
COP9 signalosome subunit 5.
    
  0.819
cops8
COP9 signalosome subunit 8.
    
  0.771
COPS6
COP9 signalosome subunit 6.
    
  0.763
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.720
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
   
 0.718
ENSACLP00000038387
Protein phosphatase 1, regulatory subunit 42.
    
  0.717
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.