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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113032369Uncharacterized protein. (190 aa)    
Predicted Functional Partners:
ENSACLP00000018503
Calpastatin.
   
 0.849
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
    0.675
ENSACLP00000022648
Nitric oxide associated 1.
     
 0.673
ankrd40
Ankyrin repeat domain 40.
    
 
 0.565
LOC113028313
SEC31 homolog B, COPII coat complex component.
    
 
 0.565
sec31a
SEC31 homolog A, COPII coat complex component.
    
 
 0.565
capn10
Calpain 10; Belongs to the peptidase C2 family.
   
 0.541
ENSACLP00000001678
Calpain 3a, (p94); Belongs to the peptidase C2 family.
   
0.541
capn7
Calpain 7; Belongs to the peptidase C2 family.
   
 0.541
LOC113023503
Calpain 1, (mu/I) large subunit b; Belongs to the peptidase C2 family.
   
0.541
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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