Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMKR1Small lysine rich protein 1. (79 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.991
mrps9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 0.964
ENSACLP00000016157
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 0.964
mrps16
Mitochondrial ribosomal protein S16.
  
 0.964
ENSACLP00000006383
Si:dkey-159f12.2.
  
 0.963
ENSACLP00000011733
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.963
rps28
Ribosomal protein S28.
  
 0.963
ENSACLP00000020299
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 0.963
mrpl32
Mitochondrial ribosomal protein L32.
  
 0.963
mrpl12
Mitochondrial ribosomal protein L12.
  
 0.962
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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