STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrnad1Ribosomal RNA adenine dimethylase domain containing 1. (575 aa)    
Predicted Functional Partners:
ENSACLP00000010488
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 0.897
wdr59
WD repeat domain 59.
    
 0.897
ENSACLP00000017518
WD repeat domain 24.
    
 0.896
castor2
Cytosolic arginine sensor for mTORC1 subunit 2.
   
 0.882
ENSACLP00000013336
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
    
 0.815
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.813
rsad1
Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
      
 0.720
ffar4
G_PROTEIN_RECEP_F1_2 domain-containing protein.
     
  0.661
mtrf1l
Mitochondrial translational release factor 1-like.
      
 0.655
ddx55
RNA helicase.
   
    0.652
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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