STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113027786Mbt domain containing 1. (726 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.859
ENSACLP00000033001
Ring finger protein 2.
    
 0.859
ENSACLP00000029465
YY1 transcription factor.
    
 0.855
YY1
YY1 transcription factor b.
    
 0.855
pcgf1
Polycomb group ring finger 1.
    
 0.836
pcgf6
Polycomb group ring finger 6.
    
 0.836
tfdp1
Transcription factor.
   
 0.822
LOC113011647
BHLH domain-containing protein.
   
 0.812
ENSACLP00000039435
Uncharacterized protein.
   
 0.812
YAF2
YY1 associated factor 2.
    
 0.801
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.