eef2 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

eef2

Eukaryotic translation elongation factor 2b. (859 aa)

Predicted Functional Partners:

ENSACLP00000037944

0.997

rpl4

0.994

fau

0.993

ENSACLP00000009119

0.993

rplp0

0.993

ENSACLP00000020299

0.993

rpl15

0.993

rps2

0.993

RPSA

0.992

rps6

0.992

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000009119	ENSACLP00000020299	ENSACLP00000009119	ENSACLP00000020299	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
ENSACLP00000009119	ENSACLP00000037944	ENSACLP00000009119	ENSACLP00000037944	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Ribosomal protein L8.	0.999
ENSACLP00000009119	RPSA	ENSACLP00000009119	ENSACLP00000001349	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family.	0.999
ENSACLP00000009119	eef2	ENSACLP00000009119	ENSACLP00000004582	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Eukaryotic translation elongation factor 2b.	0.993
ENSACLP00000009119	fau	ENSACLP00000009119	ENSACLP00000000490	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
ENSACLP00000009119	rpl15	ENSACLP00000009119	ENSACLP00000026253	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
ENSACLP00000009119	rpl4	ENSACLP00000009119	ENSACLP00000022730	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Ribosomal protein L4.	0.999
ENSACLP00000009119	rplp0	ENSACLP00000009119	ENSACLP00000015923	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
ENSACLP00000009119	rps2	ENSACLP00000009119	ENSACLP00000041528	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
ENSACLP00000009119	rps6	ENSACLP00000009119	ENSACLP00000028060	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
ENSACLP00000020299	ENSACLP00000009119	ENSACLP00000020299	ENSACLP00000009119	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
ENSACLP00000020299	ENSACLP00000037944	ENSACLP00000020299	ENSACLP00000037944	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Ribosomal protein L8.	0.999
ENSACLP00000020299	RPSA	ENSACLP00000020299	ENSACLP00000001349	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family.	0.999
ENSACLP00000020299	eef2	ENSACLP00000020299	ENSACLP00000004582	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Eukaryotic translation elongation factor 2b.	0.993
ENSACLP00000020299	fau	ENSACLP00000020299	ENSACLP00000000490	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
ENSACLP00000020299	rpl15	ENSACLP00000020299	ENSACLP00000026253	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
ENSACLP00000020299	rpl4	ENSACLP00000020299	ENSACLP00000022730	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Ribosomal protein L4.	0.999
ENSACLP00000020299	rplp0	ENSACLP00000020299	ENSACLP00000015923	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
ENSACLP00000020299	rps2	ENSACLP00000020299	ENSACLP00000041528	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
ENSACLP00000020299	rps6	ENSACLP00000020299	ENSACLP00000028060	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999