STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smad9Mothers against decapentaplegic homolog. (468 aa)    
Predicted Functional Partners:
LOC113025730
Mothers against decapentaplegic homolog.
   
0.981
LOC113033624
Mothers against decapentaplegic homolog.
   
0.981
ENSACLP00000022602
Mothers against decapentaplegic homolog.
   
0.979
LOC113014376
Mothers against decapentaplegic homolog.
   
0.979
lemd3
LEM domain containing 3.
    
 0.975
yap1
Yes-associated protein 1.
    
 0.975
LOC113012044
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.973
smad7
Mothers against decapentaplegic homolog.
    
0.972
smad6
Mothers against decapentaplegic homolog.
    
0.972
LOC113019522
Mothers against decapentaplegic homolog.
    
0.972
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.