STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000004610Protein-S-isoprenylcysteine O-methyltransferase. (264 aa)    
Predicted Functional Partners:
zmpste24
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
   
 0.973
LOC113030719
Ras converting CAAX endopeptidase 1b.
   
 0.964
LOC113017886
Ras converting CAAX endopeptidase 1a.
   
 0.964
rfk
Riboflavin kinase.
     
 0.903
ENSACLP00000027795
FAD synthase; Catalyzes the adenylation of flavin mononucleotide (FMN) to form flavin adenine dinucleotide (FAD) coenzyme. In the C-terminal section; belongs to the PAPS reductase family. FAD1 subfamily.
     
 0.889
pudp
Pseudouridine 5'-phosphatase.
     
 0.860
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
   
 0.858
nudt13
Nudix (nucleoside diphosphate linked moiety X)-type motif 13.
    
 0.853
ephx2
Epoxide hydrolase 2, cytoplasmic.
  
 
 0.835
LOC113028778
Tartrate-resistant acid phosphatase type 5.
    
  0.813
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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