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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pou6f2POU domain protein. (671 aa)    
Predicted Functional Partners:
snapc4
Uncharacterized protein.
    
  0.630
gtf2b
General transcription factor IIB.
    
 0.570
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
    
  0.555
bsx
Brain-specific homeobox.
   
 0.538
snapc3
Small nuclear RNA activating complex, polypeptide 3.
   
 
  0.527
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
     
 0.517
LOC113030141
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
     
 0.512
ENSACLP00000000691
CID domain-containing protein.
     
 0.491
ENSACLP00000000705
Uncharacterized protein.
     
 0.491
ENSACLP00000009241
RPOL9 domain-containing protein.
     
 0.487
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.