LOC113026547 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113026547

Uncharacterized protein. (533 aa)

Predicted Functional Partners:

ENSACLP00000001445

0.764

ENSACLP00000008415

0.764

LOC113018261

0.764

EIF4ENIF1

0.742

fah

0.737

ENSACLP00000018777

0.653

psmd10

0.640

ENSACLP00000031548

0.623

LOC113025559

0.623

WDR33

0.610

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4ENIF1	ENSACLP00000018777	ENSACLP00000015608	ENSACLP00000018777	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Cytoplasmic polyadenylation element binding protein 1b.	0.826
EIF4ENIF1	LOC113026547	ENSACLP00000015608	ENSACLP00000004627	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Uncharacterized protein.	0.742
ENSACLP00000001445	LOC113026547	ENSACLP00000001445	ENSACLP00000004627	RRM domain-containing protein.	Uncharacterized protein.	0.764
ENSACLP00000008415	LOC113026547	ENSACLP00000008415	ENSACLP00000004627	RRM domain-containing protein.	Uncharacterized protein.	0.764
ENSACLP00000018777	EIF4ENIF1	ENSACLP00000018777	ENSACLP00000015608	Cytoplasmic polyadenylation element binding protein 1b.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.826
ENSACLP00000018777	LOC113026547	ENSACLP00000018777	ENSACLP00000004627	Cytoplasmic polyadenylation element binding protein 1b.	Uncharacterized protein.	0.653
ENSACLP00000031548	LOC113026547	ENSACLP00000031548	ENSACLP00000004627	Notch receptor 1b.	Uncharacterized protein.	0.623
LOC113018261	LOC113026547	ENSACLP00000020126	ENSACLP00000004627	RRM domain-containing protein.	Uncharacterized protein.	0.764
LOC113025559	LOC113026547	ENSACLP00000041463	ENSACLP00000004627	Notch receptor 1a.	Uncharacterized protein.	0.623
LOC113026547	EIF4ENIF1	ENSACLP00000004627	ENSACLP00000015608	Uncharacterized protein.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.742
LOC113026547	ENSACLP00000001445	ENSACLP00000004627	ENSACLP00000001445	Uncharacterized protein.	RRM domain-containing protein.	0.764
LOC113026547	ENSACLP00000008415	ENSACLP00000004627	ENSACLP00000008415	Uncharacterized protein.	RRM domain-containing protein.	0.764
LOC113026547	ENSACLP00000018777	ENSACLP00000004627	ENSACLP00000018777	Uncharacterized protein.	Cytoplasmic polyadenylation element binding protein 1b.	0.653
LOC113026547	ENSACLP00000031548	ENSACLP00000004627	ENSACLP00000031548	Uncharacterized protein.	Notch receptor 1b.	0.623
LOC113026547	LOC113018261	ENSACLP00000004627	ENSACLP00000020126	Uncharacterized protein.	RRM domain-containing protein.	0.764
LOC113026547	LOC113025559	ENSACLP00000004627	ENSACLP00000041463	Uncharacterized protein.	Notch receptor 1a.	0.623
LOC113026547	WDR33	ENSACLP00000004627	ENSACLP00000025297	Uncharacterized protein.	WD repeat domain 33.	0.610
LOC113026547	fah	ENSACLP00000004627	ENSACLP00000000093	Uncharacterized protein.	Fumarylacetoacetase.	0.737
LOC113026547	psmd10	ENSACLP00000004627	ENSACLP00000036986	Uncharacterized protein.	Proteasome 26S subunit, non-ATPase 10.	0.640
WDR33	LOC113026547	ENSACLP00000025297	ENSACLP00000004627	WD repeat domain 33.	Uncharacterized protein.	0.610