STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113029179OTU deubiquitinase with linear linkage specificity a. (735 aa)    
Predicted Functional Partners:
LOC113010987
Uncharacterized protein.
    
 0.958
rnf31
Uncharacterized protein.
    
 0.958
LOC113010083
Si:dkey-181m9.8.
    
 0.958
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.955
RPS27A
Ribosomal protein S27a.
    
 0.952
ENSACLP00000029773
SHANK-associated RH domain interacting protein.
    
 0.948
ENSACLP00000009605
Ubiquitin B.
    
 0.946
LOC113030103
Uncharacterized protein.
    
 0.946
LOC113014537
Sorting nexin 27a.
    
 
 0.920
SNX27
Sorting nexin 27.
    
 
 0.920
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.