Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000004661Brevican. (1240 aa)    
Predicted Functional Partners:
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
    
 0.887
LOC113008807
Protein tyrosine phosphatase receptor type Z1b.
   
 
 0.871
LOC113026289
Protein tyrosine phosphatase receptor type Z1a.
   
 
 0.871
LOC113010447
Uncharacterized protein.
   
 0.851
ncan
Neurocan b.
   
 0.851
LOC113030681
LRRNT domain-containing protein.
   
 
 0.829
omg
Oligodendrocyte myelin glycoprotein b.
   
 
 0.829
ENSACLP00000007305
Uncharacterized protein.
    
 0.759
LOC113025192
Versican b.
    
 0.759
LOC113033543
Tenascin C.
   
 0.703
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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