Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113010000Semaphorin 4e; Belongs to the semaphorin family. (745 aa)    
Predicted Functional Partners:
ENSACLP00000020066
Sema domain-containing protein.
    
 0.844
ENSACLP00000039374
Sema domain-containing protein.
    
 0.844
LOC113026494
Plexin b2b.
    
 0.844
LOC113033109
Homer scaffold protein 1b.
     
  0.841
ENSACLP00000018204
Protein tyrosine phosphatase receptor type C.
    
 0.841
LOC113013095
Plexin b1a.
    
 0.839
ENSACLP00000020875
Plexin B3.
    
 0.839
ENSACLP00000039184
Plexin b1b.
    
 0.839
LOC113010015
WH1 domain-containing protein.
     
  0.785
ENSACLP00000033147
Homer scaffold protein 3b.
     
  0.785
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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