Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113012460Visinin-like 1b. (267 aa)    
Predicted Functional Partners:
LOC113014016
Family with sequence similarity 131 member C.
    
   0.782
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.766
ENSACLP00000036302
Leucine-rich repeats and guanylate kinase domain containing.
    
 0.667
LOC113014391
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
    
 
 0.665
pi4kb
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.665
CASK
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.662
LOC113015779
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.662
cfap299
Cilia and flagella associated protein 299.
    
 0.609
GPM6A
Glycoprotein M6Ab.
   
 
 0.605
gpm6a
Glycoprotein M6Aa.
   
 
 0.605
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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