Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spartSpartin a. (614 aa)    
Predicted Functional Partners:
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.892
LOC113035850
Spartin b.
     
  0.872
wwp2
E3 ubiquitin-protein ligase.
    
 
 0.650
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.650
LOC113013680
E3 ubiquitin-protein ligase.
    
 
 0.650
LOC113021975
E3 ubiquitin-protein ligase.
    
 
 0.650
ENSACLP00000039045
WW domain containing oxidoreductase.
    
   0.624
LOC113029179
OTU deubiquitinase with linear linkage specificity a.
    
   0.621
ENSACLP00000035504
NIPA magnesium transporter 1.
      
 0.541
ENSACLP00000015341
SPG21 abhydrolase domain containing, maspardin.
      
 0.530
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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