STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spartSpartin a. (614 aa)    
Predicted Functional Partners:
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.892
LOC113035850
Spartin b.
  
  
 
0.853
wwp2
E3 ubiquitin-protein ligase.
    
 
 0.561
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.561
LOC113013680
E3 ubiquitin-protein ligase.
    
 
 0.561
LOC113021975
E3 ubiquitin-protein ligase.
    
 
 0.561
snx15
Sorting nexin 15.
      
 0.537
ENSACLP00000034543
SPG11 vesicle trafficking associated, spatacsin.
      
 0.476
ENSACLP00000015341
SPG21 abhydrolase domain containing, maspardin.
      
 0.473
ENSACLP00000015691
Epidermal growth factor receptor pathway substrate 15 like 1.
    
 
 0.457
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.