Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clrn3Clarin 3. (231 aa)    
Predicted Functional Partners:
ENSACLP00000005270
Coiled-coil domain containing 43.
    
   0.811
ENSACLP00000002010
Thioredoxin domain containing 9.
    
  0.774
elmo2
Engulfment and cell motility 2.
    
 0.773
LOC113027161
Engulfment and cell motility 3.
    
 0.773
LOC113015157
Engulfment and cell motility 1.
    
 0.773
LOC113036661
CRK proto-oncogene, adaptor protein.
    
 0.769
crkl
V-crk avian sarcoma virus CT10 oncogene homolog-like.
    
 0.769
LOC113030677
Uncharacterized protein.
    
 0.769
rnf24
Ring finger protein 24.
      
 0.767
ubox5
U-box domain containing 5.
      
 0.727
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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