STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BEND4BEN domain containing 4. (537 aa)    
Predicted Functional Partners:
slc30a9
Solute carrier family 30 member 9.
      
 0.825
tmem33
Transmembrane protein 33.
      
 0.726
shisa3
Shisa family member 3.
      
 0.655
bend7
Si:ch211-220f12.4.
      
 0.652
bend5
BEN domain containing 5.
      
 0.633
bend3
BEN domain containing 3.
      
 0.613
PDCL3
Phosducin like 3.
      
 0.602
htatsf1
HIV-1 Tat specific factor 1.
      
 0.582
yipf5
Protein YIPF.
      
 0.541
pyurf
PIGY upstream reading frame.
      
 0.528
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.