Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC113022598LIM zinc-binding domain-containing protein. (679 aa)    
Predicted Functional Partners:
LOC113025140
Si:dkey-30c15.10.
    
   0.631
anln
Anillin, actin binding protein.
    
   0.631
ENSACLP00000017444
Xin actin binding repeat containing 2b.
    
  0.615
ENSACLP00000027435
Xin actin binding repeat containing 1.
    
  0.615
LOC113015691
Xin actin binding repeat containing 2a.
    
  0.615
stk3
Serine/threonine kinase 3 (STE20 homolog, yeast).
    
  0.568
LOC113021863
Uncharacterized protein.
    
  0.568
alg6
Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.
      
 0.544
vps26a
VPS26, retromer complex component A.
      
 0.528
tmlhe
Trimethyllysine hydroxylase, epsilon.
    
 
 0.501
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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