STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF207Ring finger protein 207a. (564 aa)    
Predicted Functional Partners:
ENSACLP00000028519
Nucleolar protein 9.
      
 0.536
ppil2
Peptidylprolyl isomerase (cyclophilin)-like 2.
      
 0.516
gpr153
G protein-coupled receptor 153.
    
 
 0.510
rffl
Ring finger and FYVE-like domain containing E3 ubiquitin protein ligase.
      
 0.497
gins3
GINS complex subunit 3.
      
 0.482
LOC113013538
Hairy-related 12.
    
 
 0.472
thoc7
THO complex 7.
      
 0.470
slc35f1
Solute carrier family 35 member F1.
      
 0.463
RPS27A
Ribosomal protein S27a.
    
  0.452
txndc11
Thioredoxin domain containing 11.
    
 
 0.407
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.