Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF207Ring finger protein 207a. (564 aa)    
Predicted Functional Partners:
ENSACLP00000028519
Nucleolar protein 9.
      
 0.730
bspry
Uncharacterized protein.
      
 0.720
rffl
Ring finger and FYVE-like domain containing E3 ubiquitin protein ligase.
      
 0.719
gpr153
G protein-coupled receptor 153.
    
 
 0.687
ppil2
Peptidylprolyl isomerase (cyclophilin)-like 2.
      
 0.674
thoc7
THO complex 7.
      
 0.668
FSD2
Fibronectin type III and SPRY domain containing 2.
      
 0.667
gins3
GINS complex subunit 3.
      
 0.657
mlip
Uncharacterized protein.
      
 0.657
ENSACLP00000008186
Fibronectin type III and SPRY domain containing 1.
      
 0.655
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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