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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113026090Zmp:0000001301. (507 aa)    
Predicted Functional Partners:
VAMP3
Vesicle associated membrane protein 3.
     
 0.704
LOC113036096
Protein phosphatase 2, regulatory subunit A, beta b.
   
  0.680
rhobtb3
Si:dkey-6b12.5.
    
 0.633
ENSACLP00000027364
Developmentally regulated GTP binding protein 1.
    
   0.633
fnbp4
Formin binding protein 4.
   
  0.616
ppp4r4
Protein phosphatase 4, regulatory subunit 4.
   
  0.616
relch
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
   
  0.616
ppp4r1
WRNPLPNID domain-containing protein.
   
  0.616
ENSACLP00000027946
Uncharacterized protein.
    
  0.614
LOC113015822
Perilipin; Belongs to the perilipin family.
    
  0.614
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.