LOC113010719 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113010719

Uncharacterized protein. (415 aa)

Predicted Functional Partners:

scp2

0.876

LOC113016539

0.876

acot8

0.847

acot7

0.835

LOC113026230

0.820

gad2

0.800

LOC113022565

0.795

dnal1

0.775

ENSACLP00000007479

0.753

ENSACLP00000007650

0.704

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000007479	ENSACLP00000007650	ENSACLP00000007479	ENSACLP00000007650	Uncharacterized protein.	Uncharacterized protein.	0.835
ENSACLP00000007479	LOC113010719	ENSACLP00000007479	ENSACLP00000004773	Uncharacterized protein.	Uncharacterized protein.	0.753
ENSACLP00000007479	LOC113016539	ENSACLP00000007479	ENSACLP00000040038	Uncharacterized protein.	Sterol carrier protein 2b.	0.873
ENSACLP00000007479	LOC113022565	ENSACLP00000007479	ENSACLP00000000860	Uncharacterized protein.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	0.574
ENSACLP00000007479	LOC113026230	ENSACLP00000007479	ENSACLP00000020979	Uncharacterized protein.	Acyl-CoA thioesterase 19.	0.853
ENSACLP00000007479	acot7	ENSACLP00000007479	ENSACLP00000033897	Uncharacterized protein.	Acyl-CoA thioesterase 7.	0.853
ENSACLP00000007479	acot8	ENSACLP00000007479	ENSACLP00000036021	Uncharacterized protein.	Acyl-CoA thioesterase 8.	0.884
ENSACLP00000007479	gad2	ENSACLP00000007479	ENSACLP00000012273	Uncharacterized protein.	Glutamate decarboxylase 2.	0.848
ENSACLP00000007479	scp2	ENSACLP00000007479	ENSACLP00000018948	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.873
ENSACLP00000007650	ENSACLP00000007479	ENSACLP00000007650	ENSACLP00000007479	Uncharacterized protein.	Uncharacterized protein.	0.835
ENSACLP00000007650	LOC113010719	ENSACLP00000007650	ENSACLP00000004773	Uncharacterized protein.	Uncharacterized protein.	0.704
ENSACLP00000007650	LOC113026230	ENSACLP00000007650	ENSACLP00000020979	Uncharacterized protein.	Acyl-CoA thioesterase 19.	0.599
ENSACLP00000007650	gad2	ENSACLP00000007650	ENSACLP00000012273	Uncharacterized protein.	Glutamate decarboxylase 2.	0.849
LOC113010719	ENSACLP00000007479	ENSACLP00000004773	ENSACLP00000007479	Uncharacterized protein.	Uncharacterized protein.	0.753
LOC113010719	ENSACLP00000007650	ENSACLP00000004773	ENSACLP00000007650	Uncharacterized protein.	Uncharacterized protein.	0.704
LOC113010719	LOC113016539	ENSACLP00000004773	ENSACLP00000040038	Uncharacterized protein.	Sterol carrier protein 2b.	0.876
LOC113010719	LOC113022565	ENSACLP00000004773	ENSACLP00000000860	Uncharacterized protein.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	0.795
LOC113010719	LOC113026230	ENSACLP00000004773	ENSACLP00000020979	Uncharacterized protein.	Acyl-CoA thioesterase 19.	0.820
LOC113010719	acot7	ENSACLP00000004773	ENSACLP00000033897	Uncharacterized protein.	Acyl-CoA thioesterase 7.	0.835
LOC113010719	acot8	ENSACLP00000004773	ENSACLP00000036021	Uncharacterized protein.	Acyl-CoA thioesterase 8.	0.847