tbc1d25 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tbc1d25

TBC1 domain family, member 25. (867 aa)

Predicted Functional Partners:

LOC113030085

0.973

LOC113033126

0.956

gabarap

0.908

ENSACLP00000008630

0.908

LOC113027204

0.908

map1lc3a

0.801

map1lc3b

0.801

ftsj1

0.722

ENSACLP00000007698

0.718

casc4

0.695

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000007698	ftsj1	ENSACLP00000007698	ENSACLP00000020908	EBP like.	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	0.717
ENSACLP00000007698	tbc1d25	ENSACLP00000007698	ENSACLP00000004790	EBP like.	TBC1 domain family, member 25.	0.718
ENSACLP00000008630	gabarap	ENSACLP00000008630	ENSACLP00000006443	GABA(A) receptor-associated protein like 2.	GABA(A) receptor-associated protein b.	0.871
ENSACLP00000008630	map1lc3a	ENSACLP00000008630	ENSACLP00000019512	GABA(A) receptor-associated protein like 2.	Microtubule-associated protein 1 light chain 3 alpha.	0.913
ENSACLP00000008630	map1lc3b	ENSACLP00000008630	ENSACLP00000030914	GABA(A) receptor-associated protein like 2.	Microtubule-associated protein 1 light chain 3 beta.	0.913
ENSACLP00000008630	tbc1d25	ENSACLP00000008630	ENSACLP00000004790	GABA(A) receptor-associated protein like 2.	TBC1 domain family, member 25.	0.908
LOC113027204	gabarap	ENSACLP00000038056	ENSACLP00000006443	GABA type A receptor associated protein like 2.	GABA(A) receptor-associated protein b.	0.871
LOC113027204	map1lc3a	ENSACLP00000038056	ENSACLP00000019512	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 alpha.	0.913
LOC113027204	map1lc3b	ENSACLP00000038056	ENSACLP00000030914	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 beta.	0.913
LOC113027204	tbc1d25	ENSACLP00000038056	ENSACLP00000004790	GABA type A receptor associated protein like 2.	TBC1 domain family, member 25.	0.908
LOC113030085	LOC113033126	ENSACLP00000008401	ENSACLP00000031767	RAB33B, member RAS oncogene family a.	RAB33A, member RAS oncogene family.	0.991
LOC113030085	tbc1d25	ENSACLP00000008401	ENSACLP00000004790	RAB33B, member RAS oncogene family a.	TBC1 domain family, member 25.	0.973
LOC113033126	LOC113030085	ENSACLP00000031767	ENSACLP00000008401	RAB33A, member RAS oncogene family.	RAB33B, member RAS oncogene family a.	0.991
LOC113033126	tbc1d25	ENSACLP00000031767	ENSACLP00000004790	RAB33A, member RAS oncogene family.	TBC1 domain family, member 25.	0.956
casc4	tbc1d25	ENSACLP00000039173	ENSACLP00000004790	Cancer susceptibility candidate 4.	TBC1 domain family, member 25.	0.695
ftsj1	ENSACLP00000007698	ENSACLP00000020908	ENSACLP00000007698	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	EBP like.	0.717
ftsj1	tbc1d25	ENSACLP00000020908	ENSACLP00000004790	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	TBC1 domain family, member 25.	0.722
gabarap	ENSACLP00000008630	ENSACLP00000006443	ENSACLP00000008630	GABA(A) receptor-associated protein b.	GABA(A) receptor-associated protein like 2.	0.871
gabarap	LOC113027204	ENSACLP00000006443	ENSACLP00000038056	GABA(A) receptor-associated protein b.	GABA type A receptor associated protein like 2.	0.871
gabarap	map1lc3a	ENSACLP00000006443	ENSACLP00000019512	GABA(A) receptor-associated protein b.	Microtubule-associated protein 1 light chain 3 alpha.	0.913