Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000004820Upper zone of growth plate and cartilage matrix associated b. (130 aa)    
Predicted Functional Partners:
ENSACLP00000017462
Fin bud initiation factor b.
      
 0.791
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.726
ENSACLP00000005618
Usher syndrome 1C.
      
 0.711
CPNE8
Copine 8.
      
 0.655
ggcx
Gamma-glutamyl carboxylase.
      
 0.655
LOC113026354
Copine VIII.
      
 0.655
ENSACLP00000014013
EF-hand calcium binding domain 2.
      
 0.644
znf536
Zinc finger protein 536.
      
 0.640
ENSACLP00000007376
Uncharacterized protein.
      
 0.640
ENSACLP00000016291
Coiled-coil domain containing 78.
      
 0.639
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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