STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113010417RAR-related orphan receptor C b. (502 aa)    
Predicted Functional Partners:
rorb
RAR-related orphan receptor B.
  
  
 
0.802
ENSACLP00000010348
Nuclear receptor corepressor 1.
    
 0.744
ncor2
Nuclear receptor corepressor 2.
    
 0.744
nrip1
Nuclear receptor interacting protein 1b.
    
 0.726
ENSACLP00000021018
Uncharacterized protein.
    
  0.629
ENSACLP00000028814
Uncharacterized protein.
    
  0.629
ENSACLP00000007236
Uncharacterized protein.
  
  
 
0.590
LOC113009960
Uncharacterized protein.
    
 0.589
ncoa1
Nuclear receptor coactivator 1.
    
 0.589
ENSACLP00000029819
Nuclear receptor coactivator 3.
    
 0.589
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.