STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113019992Si:ch73-141c7.1. (234 aa)    
Predicted Functional Partners:
LOC113020241
SCO cytochrome c oxidase assembly protein 1.
   
 
 0.813
LOC113028096
Cytochrome c oxidase assembly homolog 11 (yeast).
   
 
 0.729
LOC113012262
Coenzyme Q8A, genome duplicate b.
    
 
 0.692
LOC113037506
Coenzyme Q8A, genome duplicate a.
    
 
 0.692
LOC113036685
Coenzyme Q8B.
    
 
 0.692
LOC113007747
Cytochrome c oxidase copper chaperone COX17.
   
 
 0.677
oxsm
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
    
 0.664
sdhaf4
Succinate dehydrogenase complex assembly factor 4.
      
 0.662
LOC113035339
Cytochrome c oxidase assembly homolog 15 (yeast).
    
 0.646
ENSACLP00000027567
Cytochrome c oxidase assembly factor COX18.
      
 0.646
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.