Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBL5Ubiquitin like 5. (73 aa)    
Predicted Functional Partners:
mfap1
Microfibril associated protein 1.
    
 0.984
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
  0.964
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 
 0.957
wdr83
WD repeat domain containing 83.
    
 
 0.941
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 0.939
ENSACLP00000021238
ISY1 splicing factor homolog.
   
 0.938
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.937
ik
IK cytokine.
    
  0.933
lsm8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
  0.933
wbp11
Uncharacterized protein.
    
  0.933
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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