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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddoZgc:172341. (339 aa)    
Predicted Functional Partners:
LOC113030206
Malate synthase-like.
  
 
 0.949
pdpr
Pyruvate dehydrogenase phosphatase regulatory subunit.
  
 0.949
sardh
Sarcosine dehydrogenase.
  
 0.949
dmgdh
Dimethylglycine dehydrogenase.
  
 0.949
cs
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.907
LOC113015954
Serine--pyruvate aminotransferase.
  
 
 0.904
LOC113009972
Serine--pyruvate aminotransferase.
  
 
 0.904
pipox
Pipecolic acid oxidase.
   
 
 0.899
l3hypdh
Trans-L-3-hydroxyproline dehydratase.
    
 0.897
amt
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 0.894
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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