LOC113012154 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113012154

Zgc:162989. (120 aa)

Predicted Functional Partners:

ENSACLP00000003818

0.601

ENSACLP00000016285

0.601

ENSACLP00000018695

0.601

shank1

0.601

shank3

0.601

prkcz

0.523

prkci

0.523

homer2

0.495

HOMER1

0.495

ENSACLP00000035592

0.447

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003818	ENSACLP00000016285	ENSACLP00000003818	ENSACLP00000016285	Uncharacterized protein.	PDZ domain-containing protein.	0.850
ENSACLP00000003818	ENSACLP00000018695	ENSACLP00000003818	ENSACLP00000018695	Uncharacterized protein.	PDZ domain-containing protein.	0.860
ENSACLP00000003818	LOC113012154	ENSACLP00000003818	ENSACLP00000004943	Uncharacterized protein.	Zgc:162989.	0.601
ENSACLP00000003818	shank1	ENSACLP00000003818	ENSACLP00000035195	Uncharacterized protein.	SH3 and multiple ankyrin repeat domains 1.	0.641
ENSACLP00000003818	shank3	ENSACLP00000003818	ENSACLP00000038081	Uncharacterized protein.	SH3 and multiple ankyrin repeat domains 3a.	0.641
ENSACLP00000016285	ENSACLP00000003818	ENSACLP00000016285	ENSACLP00000003818	PDZ domain-containing protein.	Uncharacterized protein.	0.850
ENSACLP00000016285	ENSACLP00000018695	ENSACLP00000016285	ENSACLP00000018695	PDZ domain-containing protein.	PDZ domain-containing protein.	0.641
ENSACLP00000016285	LOC113012154	ENSACLP00000016285	ENSACLP00000004943	PDZ domain-containing protein.	Zgc:162989.	0.601
ENSACLP00000016285	shank1	ENSACLP00000016285	ENSACLP00000035195	PDZ domain-containing protein.	SH3 and multiple ankyrin repeat domains 1.	0.641
ENSACLP00000016285	shank3	ENSACLP00000016285	ENSACLP00000038081	PDZ domain-containing protein.	SH3 and multiple ankyrin repeat domains 3a.	0.641
ENSACLP00000018695	ENSACLP00000003818	ENSACLP00000018695	ENSACLP00000003818	PDZ domain-containing protein.	Uncharacterized protein.	0.860
ENSACLP00000018695	ENSACLP00000016285	ENSACLP00000018695	ENSACLP00000016285	PDZ domain-containing protein.	PDZ domain-containing protein.	0.641
ENSACLP00000018695	LOC113012154	ENSACLP00000018695	ENSACLP00000004943	PDZ domain-containing protein.	Zgc:162989.	0.601
ENSACLP00000018695	shank1	ENSACLP00000018695	ENSACLP00000035195	PDZ domain-containing protein.	SH3 and multiple ankyrin repeat domains 1.	0.641
ENSACLP00000018695	shank3	ENSACLP00000018695	ENSACLP00000038081	PDZ domain-containing protein.	SH3 and multiple ankyrin repeat domains 3a.	0.641
ENSACLP00000035592	LOC113012154	ENSACLP00000035592	ENSACLP00000004943	BRCA1 associated protein.	Zgc:162989.	0.447
HOMER1	LOC113012154	ENSACLP00000039188	ENSACLP00000004943	Homer scaffold protein 1.	Zgc:162989.	0.495
LOC113012154	ENSACLP00000003818	ENSACLP00000004943	ENSACLP00000003818	Zgc:162989.	Uncharacterized protein.	0.601
LOC113012154	ENSACLP00000016285	ENSACLP00000004943	ENSACLP00000016285	Zgc:162989.	PDZ domain-containing protein.	0.601
LOC113012154	ENSACLP00000018695	ENSACLP00000004943	ENSACLP00000018695	Zgc:162989.	PDZ domain-containing protein.	0.601