STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgsm3Small G protein signaling modulator 3. (815 aa)    
Predicted Functional Partners:
ppwd1
Peptidylprolyl isomerase domain and WD repeat containing 1.
    
   0.867
cog4
Component of oligomeric golgi complex 4.
    
   0.831
smim7
Small integral membrane protein 7.
    
   0.831
ENSACLP00000028000
Programmed cell death 6 interacting protein.
   
   0.783
ENSACLP00000023991
TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.
     
  0.765
taf5
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
     
  0.765
LOC113025444
C2H2-type domain-containing protein.
      
 0.725
ENSACLP00000031538
Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.
      
 0.720
nubpl
Nucleotide binding protein-like.
      
 0.711
pelo
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
   
  
 0.706
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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