STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem209Transmembrane protein 209. (558 aa)    
Predicted Functional Partners:
LOC113006988
Tetratricopeptide repeat domain 9C.
   
    0.537
ENSACLP00000040004
Coiled-coil domain containing 58.
      
 0.535
apopt1
Cytochrome c oxidase assembly factor 8.
      
 0.531
orc5
Origin recognition complex, subunit 5.
   
    0.491
nup43
Nucleoporin 43.
   
  
 0.479
lyrm7
LYR motif containing 7; Belongs to the complex I LYR family.
      
 0.473
pum3
Pumilio RNA-binding family member 3.
      
 0.468
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 
 0.458
ddo
Zgc:172341.
      
 0.449
polr3f
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
   
    0.438
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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