Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ASCL4Achaete-scute family bHLH transcription factor 4. (190 aa)    
Predicted Functional Partners:
TCF4
Transcription factor 4.
    
 0.804
LOC113010171
Transcription factor 3a.
    
 0.804
tcf12
Transcription factor 12.
    
 0.804
LOC113016192
Transcription factor 3b.
    
 0.804
LOC113032577
Inhibitor of DNA binding 4.
    
 0.763
LOC113026641
BHLH domain-containing protein.
    
 0.762
bhlhe23
Basic helix-loop-helix family, member e23.
    
 
 0.742
ENSACLP00000002468
Basic helix-loop-helix family, member a9.
      
 0.729
ENSACLP00000002028
Matrix AAA peptidase interacting protein 1.
      
 0.654
LOC113032775
Si:dkey-82o10.4.
      
 0.654
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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