STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHBDF2Rhomboid 5 homolog 2. (830 aa)    
Predicted Functional Partners:
adam17
ADAM metallopeptidase domain 17b.
    
 0.980
frmd8
FERM domain containing 8.
     
 0.902
ENSACLP00000002998
Si:ch1073-396h14.1.
    
 0.876
adam10
Uncharacterized protein.
    
 0.810
LOC113026622
ADAM metallopeptidase domain 10b.
    
 0.810
UBE2O
Ubiquitin conjugating enzyme E2 O.
    
 
 0.693
krit1
KRIT1 ankyrin repeat containing.
     
 0.678
mettl23
Methyltransferase like 23.
    
 
 0.628
ENSACLP00000026863
ELAV-like protein; Belongs to the RRM elav family.
      
 0.610
etfa
Electron transfer flavoprotein subunit alpha.
     
 0.605
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.