STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHBDF2Rhomboid 5 homolog 2. (830 aa)    
Predicted Functional Partners:
adam17
ADAM metallopeptidase domain 17b.
    
 0.693
ENSACLP00000002998
Si:ch1073-396h14.1.
    
 0.607
UBE2O
Ubiquitin conjugating enzyme E2 O.
      
 0.533
adam10
Uncharacterized protein.
    
 0.499
LOC113026622
ADAM metallopeptidase domain 10b.
    
 0.499
mthfs
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.495
ENSACLP00000009069
Methenyltetrahydrofolate synthetase domain containing.
  
    0.495
stoml1
Stomatin (EPB72)-like 1.
  
 0.484
galk1
Galactokinase 1.
    
  0.472
galk2
Galactokinase 2.
    
  0.472
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.