LOC113006760 protein (Astatotilapia calliptera)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC113006760

Uncharacterized protein. (268 aa)

Predicted Functional Partners:

dcp1a

0.989

LOC113009769

0.836

LOC113014945

0.756

ddx6

0.756

LOC113031867

0.756

casc3

0.671

klhl24

0.667

dcp2

0.666

smg6

0.660

cmtr1

0.656

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC113006760	LOC113009769	ENSACLP00000005029	ENSACLP00000038808	Uncharacterized protein.	Decapping mRNA 1B.	0.836
LOC113006760	LOC113014945	ENSACLP00000005029	ENSACLP00000004904	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.756
LOC113006760	LOC113031867	ENSACLP00000005029	ENSACLP00000041004	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.756
LOC113006760	casc3	ENSACLP00000005029	ENSACLP00000023796	Uncharacterized protein.	Casc3 exon junction complex subunit.	0.671
LOC113006760	cmtr1	ENSACLP00000005029	ENSACLP00000023476	Uncharacterized protein.	Cap methyltransferase 1.	0.656
LOC113006760	dcp1a	ENSACLP00000005029	ENSACLP00000030930	Uncharacterized protein.	Decapping mRNA 1A.	0.989
LOC113006760	dcp2	ENSACLP00000005029	ENSACLP00000028217	Uncharacterized protein.	Decapping mRNA 2.	0.666
LOC113006760	ddx6	ENSACLP00000005029	ENSACLP00000032748	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.756
LOC113006760	klhl24	ENSACLP00000005029	ENSACLP00000000528	Uncharacterized protein.	Kelch-like family member 24a.	0.667
LOC113006760	smg6	ENSACLP00000005029	ENSACLP00000007816	Uncharacterized protein.	SMG6 nonsense mediated mRNA decay factor.	0.660
LOC113009769	LOC113006760	ENSACLP00000038808	ENSACLP00000005029	Decapping mRNA 1B.	Uncharacterized protein.	0.836
LOC113009769	LOC113014945	ENSACLP00000038808	ENSACLP00000004904	Decapping mRNA 1B.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.968
LOC113009769	LOC113031867	ENSACLP00000038808	ENSACLP00000041004	Decapping mRNA 1B.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.968
LOC113009769	casc3	ENSACLP00000038808	ENSACLP00000023796	Decapping mRNA 1B.	Casc3 exon junction complex subunit.	0.629
LOC113009769	dcp1a	ENSACLP00000038808	ENSACLP00000030930	Decapping mRNA 1B.	Decapping mRNA 1A.	0.998
LOC113009769	dcp2	ENSACLP00000038808	ENSACLP00000028217	Decapping mRNA 1B.	Decapping mRNA 2.	0.999
LOC113009769	ddx6	ENSACLP00000038808	ENSACLP00000032748	Decapping mRNA 1B.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.968
LOC113009769	smg6	ENSACLP00000038808	ENSACLP00000007816	Decapping mRNA 1B.	SMG6 nonsense mediated mRNA decay factor.	0.767
LOC113014945	LOC113006760	ENSACLP00000004904	ENSACLP00000005029	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.756
LOC113014945	LOC113009769	ENSACLP00000004904	ENSACLP00000038808	Uncharacterized protein; Belongs to the DEAD box helicase family.	Decapping mRNA 1B.	0.968