STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prdm4PR domain containing 4. (878 aa)    
Predicted Functional Partners:
LOC113015524
Uncharacterized protein.
   
 0.882
ENSACLP00000037698
Nerve growth factor receptor a (TNFR superfamily, member 16).
     
 0.871
setdb1
SET domain bifurcated histone lysine methyltransferase 1b.
   
 0.870
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.862
dot1l
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
     
 0.844
kmt5b
Lysine methyltransferase 5B.
     
 0.840
LOC113020311
SET domain-containing protein.
     
 0.832
ENSACLP00000007944
SET domain-containing protein.
   
 0.802
LOC113034304
Lysine methyltransferase 5Ab.
   
 0.802
LOC113025395
Lysine methyltransferase 5Aa.
   
 0.802
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.