STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113012314Non-specific serine/threonine protein kinase. (697 aa)    
Predicted Functional Partners:
LOC113022989
Cell division cycle 42.
   
 0.967
nck2
Cytoplasmic protein.
    
 0.922
nck1
Cytoplasmic protein.
    
 0.922
arhgef6
Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6.
    
 0.919
arhgef7
Rho guanine nucleotide exchange factor (GEF) 7a.
    
 0.919
LOC113015990
Rho guanine nucleotide exchange factor (GEF) 7b.
    
 0.919
LOC113030817
LIM domain kinase 1b.
    
0.866
LOC113035923
LIM domain kinase 1a.
    
0.866
limk2
LIM domain kinase 2.
    
0.866
braf
B-Raf proto-oncogene, serine/threonine kinase.
    
 
0.863
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.