STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113032664IF rod domain-containing protein; Belongs to the intermediate filament family. (1284 aa)    
Predicted Functional Partners:
LOC113007020
Notochord granular surface; Belongs to the intermediate filament family.
    
 
0.674
des
Desmin b; Belongs to the intermediate filament family.
    
 
0.674
vim
Vimentin like; Belongs to the intermediate filament family.
    
 
0.674
LOC113007483
Desmin a; Belongs to the intermediate filament family.
    
 
0.674
LOC113020337
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
    
 
0.667
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.650
synm
Synemin, intermediate filament protein; Belongs to the intermediate filament family.
    
0.632
LOC113021110
Parvalbumin 6; Belongs to the parvalbumin family.
    
 
 0.600
cdk5
Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.
    
 
 0.599
ENSACLP00000008297
DUF4062 domain-containing protein.
    
  0.546
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.