STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005060Uncharacterized protein. (87 aa)    
Predicted Functional Partners:
wdr37
WD repeat domain 37.
    
 
 0.933
ENSACLP00000022819
FGFR1 oncogene partner.
    
   0.861
snx24
Sorting nexin 24.
    
   0.614
LOC113024008
Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.
    
 
 0.601
gga3
Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.
    
 
 0.601
bcap31
B cell receptor associated protein 31.
      
 0.491
bcap29
Uncharacterized protein.
      
 0.491
pdzd8
PDZ domain containing 8.
      
 0.478
tmem33
Transmembrane protein 33.
      
 0.419
mrpl38
Mitochondrial ribosomal protein L38.
      
 0.418
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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