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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JAZF1JAZF zinc finger 1b. (243 aa)    
Predicted Functional Partners:
sympk
Symplekin.
    
 
 0.877
ENSACLP00000021479
WD repeat domain 82.
    
 0.860
LOC113022450
WD_REPEATS_REGION domain-containing protein.
    
 0.860
nr2c1
Nuclear receptor subfamily 2, group C, member 1.
    
 
 0.854
tmem240
Transmembrane protein 240a.
    
 
 0.795
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
    
 
 0.795
fndc10
Fibronectin type III domain containing 10.
    
 
 0.795
ENSACLP00000022849
Uncharacterized protein.
   
 
 0.776
ENSACLP00000023083
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.776
meaf6
MYST/Esa1-associated factor 6.
    
 
 0.767
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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