STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113021324Homeobox B7a. (271 aa)    
Predicted Functional Partners:
LOC113028070
Homeobox B6b.
  
 
0.977
LOC113021320
Homeobox domain-containing protein.
   
 
0.975
HOXA7
Homeobox A7.
  
  
0.914
LOC113021319
Homeobox domain-containing protein.
   
 
0.913
ENSACLP00000035265
Homeobox B5b.
   
 
0.913
hoxc6
Homeobox C6a.
   
 
0.886
LOC113007968
Homeobox D4a.
   
 
0.859
LOC113021323
Homeobox B4a.
   
 
0.847
LOC113033212
Nuclear receptor subfamily 5, group A, member 1a.
    
 0.832
nr5a2
Nuclear receptor subfamily 5, group A, member 2.
    
 0.832
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.